FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551367
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43520.7893109308319142No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33790.6128404492833267No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32500.5894440545045314No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17370.3150351762074988No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15090.2736834086914886No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12310.22326327110617794No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTA9260.16794621368344498No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8330.15107904535454605No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7930.14382434929910567No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7870.14273614489078962No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6650.12060932192169643No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6610.1198838523161524No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6560.11897701530922235No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6000.1088204408316058No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5890.10682539941635971No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5660.10265394918448148No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5620.10192847957893744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)