FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549231
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17940.32663851821911No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14950.2721987651825917No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12440.22649850427233714No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11750.21393548434083293No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11150.20301111918300313No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11010.2004621006461762No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10800.19663857284093578No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9990.18189067987786559No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9930.1807982433620826No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9710.17679264280421172No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9330.16987387820425287No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9000.16386547736744647No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8850.16113438607798905No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8810.16040609506746706No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8620.15694671276748762No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7920.1442016200833529No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7910.14401954733072242No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7840.14274503806230893No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7570.13782907374128556No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7330.13345932767815363No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6770.12326325353084586No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6750.12289910802558486No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6520.11871143471508346No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6360.1157982706729955No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT6320.11506997966247354No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6220.11324925213616857No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG6040.10997194258881964No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6010.10942572433092815No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5900.1074229240519927No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5890.1072408512993622No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5830.10614841478357921No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5810.10578426927831824No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5740.10450976000990475No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5630.1025069597309693No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5620.10232488697833882No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5590.10177866872044732No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5570.10141452321518632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)