FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531300
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43730.8230754752493883No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16300.30679465462074157No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13200.2484472049689441No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11820.22247317899491814No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11330.21325051759834368No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11060.20816864295125165No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11060.20816864295125165No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10200.1919819311123659No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9870.1857707509881423No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9700.18257105213626953No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9240.17391304347826086No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9020.16977225672877846No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8980.16901938641069075No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8350.15716167890080934No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7950.14963297571993223No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7950.14963297571993223No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7380.13890457368718237No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7070.13306982872200263No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7030.1323169584039149No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6550.12328251458686242No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6450.12140033879164314No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6420.12083568605307736No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6420.12083568605307736No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6380.12008281573498965No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6320.11895351025785808No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG6210.11688311688311688No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6050.11387163561076605No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6030.11349520045172219No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5990.11274233013363448No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5880.11067193675889328No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5790.10897797854319594No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5660.10653115000941087No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5470.10295501599849426No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5410.10182571052136269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)