FastQCFastQC Report
Sun 21 May 2023
EGAF00007931339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560802
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15340.27353682761473747No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13530.24126162174885252No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12660.22574812500668687No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12180.21718895439031957No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11320.20185377370266155No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11020.196504292067432No Hit
AACCAGGGTGACGTTAATCGGGAACACGTCAAAATAGGTATCAC10880.19400786730432487No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10350.18455711641541936No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10260.18295227192485047No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9840.17546299763552914No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT9690.17278825681791435No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9000.16048444905688639No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT8570.15281685871305736No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA8110.14461432020570542No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7480.13338040877172336No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG6900.12303807761027956No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6780.12089828495618773No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6370.11358732672137405No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT5990.10681131665008327No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)