FastQCFastQC Report
Sun 21 May 2023
EGAF00007931340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560802
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25320.45149625001337373No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21540.38409278140948144No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13210.2355555080046077No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12570.22414328051611798No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11410.2034586181932304No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11250.20060556132110796No Hit
ATGTCCGATCACCACTTCCCGGCCTCCCTGC10910.19454281546784782No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10830.1931162870317866No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10370.18491374852443465No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10240.18259563981583518No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC9690.17278825681791435No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9310.16601224674662357No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT9150.16315918987450115No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA8500.1515686463315038No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8000.14265284360612124No Hit
TACGACGACTTCCATACCGATGAAGATAAAC7220.12874419135452442No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7060.125891134482402No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6530.11644038359349645No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG6140.10948605746769804No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)