FastQCFastQC Report
Wed 31 May 2023
EGAF00007931341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543839
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14350.2638648570624762No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12880.23683479853412498No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12420.22837641287219196No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11930.21936639336274155No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11030.20281737793722038No Hit
AACCAGGGTGACGTTAATCGGGAACACGTCAAAATAGGTATCAC10590.19472674817363225No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10580.19454287022445982No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10220.18792326405425136No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10140.1864522404608717No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9040.1662256660519014No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT8860.16291586296679716No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT8100.1489411388296904No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8030.1476539931854832No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA7310.13441478084506628No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6690.12301434799637392No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG6500.11952066696209725No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6340.11657861977533793No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT5890.10830411206257734No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5850.10756860026588752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)