FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543839
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43440.7987658112051546No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27090.49812536430818677No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20230.3719850911758811No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12720.23389275134736565No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11970.22010190515943137No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11640.2140339328367403No Hit
ATGTCCGATCACCACTTCCCGGCCTCCCTGC10810.19877206305542633No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10640.19564613791949453No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9850.18111977993487044No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9700.17836161069728357No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC8740.16070932757672765No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT8550.157215646542451No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8290.1524348198639671No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA7460.13717295008265315No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7130.13110497775996205No Hit
TACGACGACTTCCATACCGATGAAGATAAAC6960.12797905262403028No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6870.12632415108147815No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6420.11804964336871758No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG6110.11234942694437142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)