FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557674
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15170.27202272295283625No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11620.2083654608247829No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9520.17070905224199084No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG7410.13287332742785213No Hit
ATGCGTATCAAACGTACCTCCAACCGTTCCA6610.1185280289201218No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6060.10866563619605721No Hit
GAACGTTGTTGCGAGGAACTGCAGCGTATGT5990.1074104225766308No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5660.10149298694219203No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)