FastQCFastQC Report
Sun 21 May 2023
EGAF00007931346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542787
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT67271.2393443468616603No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10530.19399875089123356No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10140.18681361196933602No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9770.17999694171009992No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8030.14794016805855703No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6800.1252793453048802No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA6520.1201207840276204No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6310.11625186306967558No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6220.11459375408769924No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6080.11201447344906933No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6060.11164600478640793No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5570.10261852255120332No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)