FastQCFastQC Report
Sun 21 May 2023
EGAF00007931350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552528
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT74791.3535965598123534No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31360.5675730460718733No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC25290.4577143601772218No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23130.41862131873859787No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC19970.36142964700431474No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16640.30116120811976954No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15680.28378652303593666No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC15060.2725653722526279No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13450.24342657747661658No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13330.24125474184113746No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC11340.2052384675527756No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11160.20198071409955695No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11020.19944690585816466No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA10910.19745605652564213No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG10180.1842440564098109No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9660.17483276865606812No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8750.15836301508701822No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG8680.15709611096632206No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA8090.14641791909188312No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7880.1426172067297947No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG7860.1422552341238815No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA7800.14116931630614196No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7290.13193901485535575No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6870.12433759013117887No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6760.12234674079865636No Hit
GCTATGCAGACCGGTTGGTACAAAGTAGGCA6610.11963194625430748No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6590.11926997364839428No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT6530.11818405583065475No Hit
CGCGATAACAACATTGAACGTGACAACAATA6200.11221150783308718No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6070.1098586858946515No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6010.10877276807691194No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5960.10786783656212898No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5930.10732487765325921No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5720.10352416529117077No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5690.10298120638230097No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5580.10099035704977848No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)