FastQCFastQC Report
Wed 31 May 2023
EGAF00007931352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529624
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT71941.3583221304170505No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43060.8130296210141534No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30720.5800341374257965No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC23600.44559914203283835No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22890.43219340513269794No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC17650.33325529054574565No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15600.2945485854115372No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC14070.2656601664577134No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13870.26188390254218086No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12190.2301632856517076No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12150.22940803286860112No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC11180.21109315287826833No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11050.2086385813331722No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11020.20807214174584235No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA10090.19051251453861606No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG9840.18579218464420041No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9380.1771067776384756No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG8070.1523722489917375No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA7870.148595985076205No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7800.1472742927057686No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA7380.1393441384831503No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG7080.13367974260985152No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6850.12933703910698913No Hit
GCTATGCAGACCGGTTGGTACAAAGTAGGCA6520.12310620364636042No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6400.12084044529704091No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6330.11951875292660454No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT6260.11819706055616816No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6110.11536486261951874No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6100.11517604942374213No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6080.11479842303218886No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5850.11045571952932645No Hit
CGCGATAACAACATTGAACGTGACAACAATA5650.10667945561379394No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5630.10630182922224068No Hit
GGTTACCAGAAACTGCGTCATAACATCGACA5430.10252556530670816No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5350.10101505974049516No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5330.1006374333489419No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)