FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931356

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931356
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563800
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16200.2873359347286272No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14870.26374600922312874No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10010.17754522880454063No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9840.17452997516849947No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9660.17133735367151473No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9190.16300106420716565No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8940.15856686768357572No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8550.15164952110677546No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8320.14757006030507272No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8120.14402270308620077No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7990.14171692089393403No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7770.1378148279531749No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7750.1374600922312877No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7590.13462220645619014No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7190.12752749201844626No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6880.12202908832919476No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6240.11067754522880455No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6220.11032280950691734No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5930.10517914153955303No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5850.10376019865200425No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5680.10074494501596311No Hit

[OK]Adapter Content

Adapter graph