FastQCFastQC Report
Sun 21 May 2023
EGAF00007931358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547508
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43840.8007188936052076No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16200.2958860875092236No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13640.2491287798534451No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9460.17278286344674415No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9260.16912994878613646No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9260.16912994878613646No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8690.15871914200340453No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8370.15287447854643219No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7930.14483806629309526No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7580.1384454656370318No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7450.1360710711076368No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7400.13515784244248485No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7370.1346099052433937No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7320.13369667657824177No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6450.11780649780459829No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6180.11287506301277789No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6120.11177918861459558No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5940.10849156542004866No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5690.10392542209428904No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5640.1030121934291371No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5600.10228161049701558No Hit

[OK]Adapter Content

Adapter graph