FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569110
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT28480.5004304967405246No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26300.462125072481594No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA22160.38937990898068914No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT21430.3765528632426069No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17370.3052134033842315No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16730.293967774243995No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15660.2751664880251621No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT15110.26550227548277133No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12190.21419409253044228No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12120.2129641018432289No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC11320.19890706541793327No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11160.19609565813287413No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA9880.17360439985240111No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9880.17360439985240111No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9730.1709687055226582No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG9470.1664001686844371No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9150.16077735411431884No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8930.15691166909736254No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8440.14830173428686896No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8250.14496318813586126No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7780.13670467923600008No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7590.13336613308499234No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7000.12299906872133683No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6950.12212050394475585No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6820.1198362355256453No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6460.11351056913426226No Hit
GTCAGACTGCAGCATGGAGTCGTATACCGCATGAACCAGTTGGA5960.1047249213684525No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5940.10437349545782011No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)