FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569110
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48320.8490450000878564No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC38280.6726291929503962No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG29220.5134332554339232No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA22860.4016798158528228No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA21620.3798914093936146No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19040.33455746692203614No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18690.3284075134859693No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG17290.30380769974170196No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC16470.28939923740577395No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15830.2781536082655374No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC14080.24740384108520322No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12890.22649399940257595No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG11820.20769271318374305No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10700.18801286218832913No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10480.18414717717137286No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9840.17290154803113633No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9460.1662244557291209No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9340.16411590026532655No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9290.16323733548874558No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9010.1583173727398921No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8990.1579659468292597No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8870.1558573913654654No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8320.14619317882307462No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8290.14566603995712604No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8070.14180035494016974No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7490.13160900353183042No Hit
GCAGCTCGTGAAGAAGAAGAACCGCACGAAC6750.11860624483843193No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5800.10191351408339337No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5790.10173780112807716No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)