FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences582263
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA41340.7099884416492204No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35300.6062552489167267No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20120.3455483175128765No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18150.3117148092872121No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10230.17569380159824682No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9840.16899579743174475No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8160.14014285640681273No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7790.13378833963346462No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6240.10716806666403325No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5870.10081354989068514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)