FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences567452
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26800.4722866427468755No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23750.41853760318053335No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19710.3473421540500342No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18120.3193221629318427No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16090.2835482120073592No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13800.2431923757427941No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13650.24054898035428549No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13270.23385237870339695No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG12220.2153486109838365No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11550.20354144491516463No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10890.19191050520572664No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10090.17781239646701394No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9080.16001353418438916No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8320.14662033088261212No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG8020.14133354010559485No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7860.1385139183578523No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7820.13780901292091666No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6980.12300599874526831No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6610.1164856234536137No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6260.11031770088042689No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6170.1087316636473217No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6080.10714562641421653No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5970.10520713646264353No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5860.10326864651107055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)