FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences567452
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33420.5889484925597231No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27830.49043795774796806No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20060.353510076623221No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18950.33394895074825715No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17890.3152689566694628No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15670.2761467049195351No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15060.2653968970062666No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13900.2449546393351332No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13730.24195879122815675No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13410.23631954773267166No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG12650.2229263444308946No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11430.20142672860435773No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10230.18027956549628868No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10140.1786935282631835No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9130.1608946659805587No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8980.15825127059205008No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG8570.1510259898634598No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8150.14362448277563564No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7880.1388663710763201No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7450.13128863762926204No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7350.12952637403692296No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7140.12582562049301085No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7110.12529694141530914No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6920.12194864058986488No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5990.10555958918111136No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5970.10520713646264353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)