FastQCFastQC Report
Wed 31 May 2023
EGAF00007931367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549010
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25260.46010090890876304No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23090.4205752172091583No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19240.35044899000018215No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17100.31146973643467335No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15580.28378353764048014No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13730.25008651937123183No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12630.23005045445438152No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12560.22877543214149107No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG11400.20764649095644888No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10880.19817489663211965No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10420.18979617857598224No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10260.18688184186080398No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8690.15828491284311763No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8080.1471740041165006No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG8060.14680971202710333No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7340.1336951968088013No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7310.13314875867470538No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6700.12203784994808838No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6520.11875922114351287No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6020.1096519189085809No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5990.109105480774485No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5790.1054625598805122No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5750.10473397570171764No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5520.10054461667364893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)