FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549010
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44240.8058141017467806No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32120.5850530955720297No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25520.46483670607092764No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18330.33387369993260596No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18010.32804502650224954No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16680.3038196025573305No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16500.30054097375275496No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14320.2608331360084516No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12950.235879127884738No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12710.23150762281197063No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12660.23059689258847746No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG11560.21056082767162712No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10840.19744631245332506No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10180.18542467350321487No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9810.17868526984936522No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG8460.1540955538150489No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8390.15282053150215844No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8140.14826688038469246No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7570.13788455583687No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7290.1327844665853081No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6970.12695579315495165No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6860.1249521866632666No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6840.12458789457386933No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6580.1198520974117047No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6120.1114733793555673No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5720.10418753756762172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)