FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences538178
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45350.8426580053439569No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29590.549818089925638No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27580.512469851982058No Hit
ATGTCCAACATGGACATCGATGGTATTAACA23140.42996926667385144No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17760.3300023412328263No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14790.2748161388982827No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14750.27407289038199256No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13100.24341388908502393No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12240.2274340459847857No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10180.189156747395843No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9590.1781938317805633No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7900.1467915819673045No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6980.12969686609263106No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6850.12728130841468807No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6740.12523737499489015No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6180.11483189576682808No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA5910.10981496828186958No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5500.10219667098989554No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5440.10108179821546032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)