FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562176
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA32110.5711734403460839No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28700.5105162795992715No Hit
ATGTCCAACATGGACATCGATGGTATTAACA24350.43313837659380694No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18650.3317466416211293No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15790.28087289389799636No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14850.26415215163934425No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14510.25810422358834245No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13000.23124430783242259No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11430.20331711065573768No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10390.1848175660291439No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9650.17165442850637522No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8730.15528944672131148No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7050.12540556693989072No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6860.12202584244080145No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6830.12149220173041893No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6720.11953551912568307No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6630.11793459699453553No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6130.10904058515482697No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5790.10299265710382514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)