FastQCFastQC Report
Sun 21 May 2023
EGAF00007931375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569174
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32440.5699487327249664No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA29250.5139026027190279No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG18260.320815778654682No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17360.305003390878712No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12430.218386644505898No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11500.2020471771373956No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG10350.18184245942365604No Hit
ATAACGCAGGTAAGAGTACACTTCGCGTTCTTCTTCGGTATAAC10090.1772744362883758No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9450.16603007164768593No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9060.15917803694476557No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8930.15689402537712543No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7260.12755326139282538No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6890.12105261308492658No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6690.117538749134711No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6600.11595751035711399No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6520.11455196477702775No Hit
TTTATCGTTCGGGTTGTCCGGGATTGGGGTGCCGGTATAGCGCA6070.1066457708890427No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6060.10647007769153194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)