FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931376

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931376
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569174
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT66211.1632646607188661No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26800.4708577693288871No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG18870.3315330637028395No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17570.3086929480264383No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13960.24526770372504716No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12220.21469708735817167No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA10470.18395077779378538No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG10120.17780151588090815No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9880.17358487914064943No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9160.16093496891987336No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7300.1282560341828685No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7250.1273775681953146No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6830.1199984538998619No Hit
ACCAACCGTATCATTACTGTATATATGGGTA6080.10682146408655349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)