FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences553978
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA31190.5630187480369256No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA28240.5097675358949273No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG18950.3420713457935153No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16850.3041637032517537No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11930.21535151215391224No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11620.2097556220644141No Hit
ATAACGCAGGTAAGAGTACACTTCGCGTTCTTCTTCGGTATAAC10500.18953821270880794No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG9950.17961002061453704No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9480.17112592918852373No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8630.1557823595882869No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8040.14513211715988722No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7160.1292470098090538No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6830.12329009455249126No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6080.1097516507875764No Hit
TTTATCGTTCGGGTTGTCCGGGATTGGGGTGCCGGTATAGCGCA6080.1097516507875764No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6000.10830755011931882No Hit
CAGTTCATACGGGCTAATGGCGTAAGAGTTTTTTTCGTAAGATT5890.10632191170046465No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5800.10469729844867486No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)