FastQCFastQC Report
Wed 31 May 2023
EGAF00007931378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences553978
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT70741.276946015906769No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45380.8191661040691146No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26030.4698742549343115No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG19750.35651235247609114No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16170.29188884757156425No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12480.22527970424818314No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11170.2016325558054652No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG10100.18231770936752No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA9800.17690233186155407No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9590.17311156760737792No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7210.13014957272671476No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6440.11625010379473553No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6380.11516702829354233No Hit
ATCGTTCAGAACGAGCCAACCTGGGCAGCTA6030.10884908786991541No Hit
ACCAACCGTATCATTACTGTATATATGGGTA5930.10704396203459345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)