FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528781
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA41900.7923885313579724No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA35050.6628452989044613No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24320.45992575376195444No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT21200.4009221208780195No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG21030.39770717934267685No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17600.33284100601194067No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG16930.32017035407853156No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT16680.3154424988794983No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG15070.2849951113977242No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG13550.25624975178760206No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA12000.22693704955359592No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11650.22031805227494938No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG11620.21975070965106536No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC11540.21823779598737475No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT11510.21767045336349072No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT11350.21464462603610948No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT10670.20178485989473904No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10450.19762434731958978No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10380.19630054786386048No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9940.18797952271356194No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG9890.1870339516737553No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9760.184575466970258No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA9540.18041495439510874No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT9390.1775782412756888No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT9370.17720001285976617No Hit
GCCACGGCTCAGCTGAGAGCGGATTTTACGGTACTGGCCAGAAC8910.16850075929354497No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8820.166798731421893No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8060.15242605161683193No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7860.14864376745760532No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7760.14675262537799202No Hit
AGACGCCGGACCGATACGGCTGGCCCACGGACGGCTAGTGCCCG7750.1465635111700307No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7570.14315945542672676No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG7390.13975539968342282No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7250.1371078007719642No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7130.13483843027642825No Hit
CAGCAGTGCAGAGAAACGGCGACGGGCGCCCAGCGGCGGAGACG6900.13048880349331765No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6340.11989840784748318No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6300.11914195101563785No Hit
GGAGACAACCAGCTCGTCTTCACCGTTCGGCGGAGGCGGCGGGA6270.11857460839175386No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6160.11649435210417923No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT6060.11460321002456594No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5980.1130902963608753No Hit
GAACTCGGTCAGGCCCATGCGGCGTTTGTTGGAGATGTCGTAAA5920.11195561111310731No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA5890.11138826848922333No Hit
GCTCACAACCAGTTCGTCTTCGCCGTTAGGCGGCGGCGGCGGAA5880.11119915428126201No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5720.10817332695388071No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG5670.10722775591407406No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT5660.10703864170611274No Hit
ACCGTTCGGCGGTGGCGGCGGAATTTTTTTAACCAGTTCCGGAG5340.10098698705135019No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)