FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541338
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC44880.8290568923666913No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT42550.7860153914929304No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC42180.7791804750451659No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG32590.6020268298179696No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC23100.42672045930638525No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG20900.38608041556292005No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19400.35837129482873914No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC19330.3570782025278107No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG18240.3369429081276393No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17050.3149603390118558No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA14050.2595420975434941No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG12970.23959153061488386No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG12910.23848316578551662No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12370.2285078823212115No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG11590.2140991395394375No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11370.21003513516509092No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11170.20634058573386682No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG10990.20301549124576512No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10310.19045402317960314No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT10140.18731365616306264No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9790.18084819465842042No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG9300.17179654855192134No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8970.16570054199040157No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT8660.1599739903720042No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8240.15221543656643355No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT7750.14316379045993446No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7660.14150124321588362No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7550.13946924102871033No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7480.1381761487277819No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT7340.13558996412592503No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG7300.1348510542396802No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG7220.13337323446719057No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7090.13097177733689486No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7010.12949395756440524No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7000.129309230092844No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6860.12672304549098715No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6720.12413686088913027No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6650.12284376858820183No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6590.1217354037588346No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6530.12062703892946736No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC6410.1184103092707329No Hit
TGGGGTACCGGATACCTGTTTTTCCAGGCGACCCTGAACCGGAG6380.11785612685604926No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6380.11785612685604926No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6350.11730194444136564No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6340.11711721696980446No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT6330.11693248949824324No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC6310.11656303455512082No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6150.11360739501014153No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5870.10843502580642778No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5500.10160010935866316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)