FastQCFastQC Report
Wed 31 May 2023
EGAF00007931383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528568
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC43230.8178701699686701No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT42860.8108701245629701No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC41690.7887348458476486No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG31980.6050309515521182No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC20850.39446201813200954No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG20800.39351606605015815No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG18920.3579482677725477No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC18410.34829955653766403No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17760.33600217947359656No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17720.3352454178081155No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA14080.26638010624933783No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG12950.24500158919949752No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG12070.2283528325589139No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11400.21567707466210595No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG11330.21435274174751406No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11150.2109473142528492No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11020.20848783884003572No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG10650.2014877934343358No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10540.19940669885426285No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT10290.19467693844500614No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8950.16932542265139017No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8770.16591999515672534No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8760.16573080474035506No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7970.15078476184710388No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT7880.14908204809977146No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT7770.1470009535196985No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG7350.13905495603214724No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG7350.13905495603214724No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7310.13829819436666616No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7300.1381090039502959No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7240.13697386145207427No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7110.1345143860392608No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7100.13432519562289053No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT7090.13413600520652025No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7070.13375762437377972No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7020.13281167229192836No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6860.1297846256300041No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6660.1260008173025987No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6510.1231629610570447No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6480.12259538980793389No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6280.11881158148052853No Hit
TGGGGTACCGGATACCTGTTTTTCCAGGCGACCCTGAACCGGAG6210.11748724856593665No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6200.11729805814956638No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC6070.11483858273675289No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5990.11332505940579074No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5980.11313586898942048No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC5830.11029801274386644No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5820.11010882232749618No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT5680.10746015649831242No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5310.10046011109261249No Hit
TTTAACGTTAGAGGTGAATACGCCACCGAAGCGTGGACCCAGAC5290.10008173025987195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)