FastQCFastQC Report
Sun 21 May 2023
EGAF00007931386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522045
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44900.8600791119539504No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG20590.3944104435441389No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18830.3606968747904874No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18160.3478627321399496No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15120.2896302042927334No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10780.2064956086161155No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10200.19538545527684395No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9850.18868105239969735No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA9190.17603846411707805No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8360.16013945157984463No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8180.15669147295731212No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8170.15649991858939363No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7600.1455813196180406No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7270.13926002547673094No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7220.13830225363713858No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG7100.13600360122211688No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6800.13025697018456261No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6560.12565966535451922No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6410.12278634983574213No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6380.12221168673198671No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC5850.11205930523230756No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5550.10631267419475333No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA5380.10305624994013927No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5370.10286469557222078No Hit

[OK]Adapter Content

Adapter graph