FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543019
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18620.3428977623250752No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16410.3021993705560947No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14270.26279006811916344No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10380.19115353238100324No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10100.18599717505280663No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10090.18581301943394246No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA9930.1828665295321158No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9790.1802883508680175No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA9470.17439537106436423No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8160.1502709849931586No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7630.14051073719335788No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT7160.13185542310674211No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT7090.13056633377469296No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6980.12854062196718713No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6980.12854062196718713No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6490.11951699664284306No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6450.1187803741673864No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG5810.10699441456007985No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC5780.10644194770348735No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5580.10275883532620406No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5560.10239052408847574No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5440.10018065666210574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)