FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543019
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACCGACGCCCTGACTGAAGGTCTGTCCG21020.3870951108524748No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC20670.380649664192229No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG20410.3758616181017607No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16440.30275183741268724No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11950.22006596454267713No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10970.20201871389398895No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10090.18581301943394246No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA9830.18102497334347417No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9390.17292212611345092No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9180.16905485811730345No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9020.1661083682154768No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8210.15119176308747945No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7750.14272060461972785No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7510.13830086976698788No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG7240.13332866805765545No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7200.13259204558219878No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6920.12743568825400217No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6700.12338426463899053No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6480.1193328410239789No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6310.1162021955032881No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC6200.11417648369578229No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6030.11104583817509149No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5750.10588948084689485No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA5690.10478454713370987No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5550.10220636846961156No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5470.10073312351869824No Hit
GGTTACCAGAAACTGCGTCATAACATCGACA5460.10054896789983407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)