FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572286
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33190.5799547778558273No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18280.3194207092258067No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15510.2710183369853535No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13320.23275075748838864No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC11960.20898641588296762No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10060.175786232757747No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9910.1731651656689138No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9620.1680977692971696No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9130.15953561680698114No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9050.15813771435960342No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9020.15761350094183676No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8790.15359453140562584No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8010.1399649825436932No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7190.12563648245807166No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6820.11917118363894977No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6560.1146280006849722No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT6040.1055416347770171No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)