FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556849
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44080.7915970038556234No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34200.6141700891983285No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17550.31516622998335275No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16110.28930643675394946No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12920.2320198114749241No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC11090.19915632424589072No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9440.16952531117053277No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9130.163958272350314No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9090.16323994476060835No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8430.15138753953046516No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8420.15120795763303876No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8210.1474367377870841No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8020.1440246817359823No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6810.12229527214738646No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6380.11457325055805073No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6240.11205910399408098No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5930.10649206517386221No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT5840.1048758280970245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)