FastQCFastQC Report
Sun 21 May 2023
EGAF00007931393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574728
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG30630.5329477596358626No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25740.4478640330730363No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23330.405931153519578No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23060.40123327904678385No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22440.39044556729444185No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21960.3820937904539191No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18870.3283292270430534No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG18650.32450132932448045No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17280.3006639662588216No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16800.29231218941829873No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14570.25351122618003646No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14140.24602942609373477No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13430.23367575618379477No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13080.22758591890424687No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12920.22480199329073927No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12660.2202781141687894No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12640.21993012346710095No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12170.21175234197742238No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11470.19957266741832658No Hit
ACCCTGCGGGCCCACGTCACCGTCCGCGCCTTTGAACAGTGCCC11040.1920908673320249No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10630.18495705794741166No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10590.18426107654403473No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10550.18356509514065783No Hit
TGGCGGGTTTTTCAGACGCGGTTTCGTGGACGGCTTGTTCGTCT9460.16459960189863726No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9200.1600757227766874No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8990.15642182040895866No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA8880.1545078715496722No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8610.14980999707687812No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8560.148940020322657No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8490.1477220528667474No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8070.14041424813128994No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8030.13971826672791302No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7830.13623835971102852No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7480.13014852243148065No Hit
CGGTTCGCGCGGCTCACGTGGTACGCGCGGTTCACGCGGAACAC7380.1284085689230384No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7060.12284071769602316No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6880.1197088013808271No Hit
CGCATCCAGATCTACGGTCTCACCCTGGTTCAGAGCTTCGTTCA6780.11796884787238485No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG6660.11588090366225413No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6510.11327097339959076No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6260.10892108962848512No Hit
GCGACGACCGGCCGCAAATTCTTTAAATTCACGCAGTGCCAGCG6120.10648515471666598No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5910.10283125234893722No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5780.10056931278796231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)