FastQCFastQC Report
Sun 21 May 2023
EGAF00007931394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574728
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA49830.8670188332567753No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44480.7739313205551147No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33110.5760986066452305No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32620.5675728344538634No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT29960.5212900711292995No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25890.45047396333569967No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25110.4369023259698501No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23240.4043651953619799No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22740.39566542781976866No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19790.34433679932072214No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18740.32606728748207847No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG18020.3135396222212942No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15100.26273297977478044No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14980.26064503556464974No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14680.25542517503932294No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13360.2324577887278852No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13350.232283793377041No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12970.2256719700449604No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11980.20844643031138207No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11690.20340056513689952No Hit
GCCAACGACGTCTCCGGTCAGTCTGGCTTCA11570.20131262092676883No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11520.2004426441725477No Hit
AAACAGCCAACCACCACCTCCCCGATCCACA10590.18426107654403473No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9570.16651355075792373No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9520.1656435740037026No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9140.15903175067162206No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9000.1565958157598029No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG8910.15502985760220486No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8690.15120195988363191No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8680.1510279645327877No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8190.1425021923414206No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8180.14232819699057642No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7940.138152308570315No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG7940.138152308570315No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7540.131192494536546No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA6970.12127475953842513No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6910.12023078743335978No Hit
CTGGACAAACTGACTCAGTCCCTGGACTCCG6870.11953480602998288No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6730.11709887111816372No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6640.1155329129605657No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6630.11535891760972147No Hit
GATGGTGAACGTAACAACCAGGTTCTGGAAG6220.10822510822510822No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6080.10578917331328906No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5980.10404921980484681No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT5900.10265725699809301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)