FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508154
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT70741.3920976711784223No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43930.8645017061756868No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15330.3016801993096581No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12490.2457916300963881No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10480.20623669202643297No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9300.18301538509979257No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC8030.15802296154315423No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7750.15251282091649382No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7660.1507417042864958No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7140.14050858597984076No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6720.13224337503985012No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6650.130865839883185No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5820.1145322087398702No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5300.10429909043321511No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)