FastQCFastQC Report
Wed 31 May 2023
EGAF00007931397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514950
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA34270.6655015050004854No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA31010.6021943878046413No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12570.24410136906495775No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11290.21924458685309256No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9890.19205748130886494No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9800.19030973880959315No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8590.16681231187493933No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC8000.15535488882415768No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7400.14370327216234588No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6950.134964559665987No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6900.133993591610836No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6750.13108068744538304No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6660.12933294494611128No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6330.12292455578211477No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5630.10933100301000097No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5390.10467035634527624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)