FastQCFastQC Report
Sun 21 May 2023
EGAF00007931400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences586497
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54910.9362366729923598No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA52440.8941222205740182No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45520.7761335522602844No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA27010.4605309149066406No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22990.3919883648168703No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19590.3340170537956716No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19160.3266853879900494No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18120.30895298697180035No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17380.2963357016318924No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14270.24330900243309003No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11590.19761396903990985No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9390.16010312073207536No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9210.15703405132507073No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8670.1478268431040568No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8050.13725560403548526No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7850.1338455269165912No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7170.12225126471235148No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6800.1159426220423975No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6510.11099801022000112No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6130.10451886369410245No Hit

[OK]Adapter Content

Adapter graph