FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007931406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441749
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24590.5566509488419895No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16840.3812119552053316No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT15270.34567141068796986No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15230.3447659191079097No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14480.3277879519817815No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14410.3262033417166762No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14250.32258137539643555No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14130.31986490065625506No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13530.30628252695535246No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12450.2818342542937279No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC12310.27866503376351726No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12020.2721002198080811No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9970.22569377632999738No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG9350.2116586568390647No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9120.20645208025371875No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9020.20418835130356833No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8880.2010191307733577No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8140.18426753654224456No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8050.1822301804871092No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7870.17815546837683843No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7400.16751594231113143No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7320.1657049591510111No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG7220.16344123020086068No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6870.15551817887533417No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6340.14352041543953695No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6220.14080394069935642No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6220.14080394069935642No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6200.14035119490932632No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6110.13831383885419096No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5860.1326545164788149No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5660.12812705857851403No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5600.12676882120842378No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5600.12676882120842378No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5570.12608970252337867No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5490.12427871936325832No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT5400.12224136330812295No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5310.12020400725298755No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5200.11771390540782209No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5150.11658204093274688No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5140.11635566803773184No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5030.11386556619256637No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5000.11318644750752124No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4920.1113754643474009No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4830.1093381082922655No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4710.10662163355208501No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4660.1054897690770098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)