FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404732
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG25620.63301147425951No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22540.5569117341845963No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22530.556664657106431No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19870.4909421543144599No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19420.4798236857970212No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19060.47092891098307027No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG18220.45017443641718474No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17670.43658519711809296No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17620.43534981172726644No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16350.4039710228002728No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16070.39705286461164424No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11740.2900684897660674No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11730.2898214126879021No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11550.28537402528092665No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9540.23571153256970045No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8070.19939120207940067No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7620.18827273356196197No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7410.1830841149204906No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6990.1727068776375478No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6700.16554164237075397No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6420.15862348418212546No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6180.15269363430615815No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5870.1450342448830337No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5840.1442930136485378No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5830.14404593657037248No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5600.1383631637725705No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5160.1274917723332971No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5050.12477392447347874No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4890.12082069122283387No Hit
TTCCGGGTGGATGTGACCGTGATGGTCGTGATCGTGATCATGGT4830.11933822875384206No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4740.1171145350503543No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT4700.11612622673769309No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4560.11266714764337883No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4130.10204283328227075No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4050.1000662166569483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)