FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417568
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT36040.8630929573147367No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT23640.5661353360410759No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT12760.30557897156870256No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG10930.2617537742355736No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC10900.2610353283776535No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9990.23924247068740898No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8260.19781209288068052No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7920.18966970649091885No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7800.18679592305923826No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7330.17554027128515595No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7310.17506130737987585No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7100.17003218637443482No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6920.16572151122691395No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT6640.15901601655299258No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT6520.15614223312131198No Hit
GGACGCGGTGCTAGAGGCACGGGATTTGGAAGTGGTAGTCTTGC6040.14464709939458964No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6030.14440761744194958No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5930.14201279791554908No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5890.14105487010498888No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5810.1391390144838685No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5780.13842056862594834No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5510.131954555904667No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5430.13003870028354664No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5320.1274043988045061No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5270.12620698904130584No Hit
GTAAGACAGCACCTGGCCCGGATAGATCAGGTTGGCGTTGGAGA5120.12261475975170512No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4790.11471185531458349No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT4740.11351444555138324No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4740.11351444555138324No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4550.1089642884512223No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4540.10872480649858225No Hit
ATCATACAGGTCGCGGAAGTCCAGGTTGTGTTCAGATGCAGTCA4540.10872480649858225No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4520.10824584259330217No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4450.10656946892482183No Hit
TTTTGCTTTGTCACGTGGGTCATACAGATCACGGAAGTCCAGGT4440.10632998697218178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)