FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390239
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT34070.8730547177498916No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT22370.5732384513080445No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT12780.3274916141134023No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC10090.25855949815369556No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9650.24728435650972863No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9610.2462593436330044No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7710.19757123198860185No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7410.18988363541316985No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7360.18860236931726454No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7200.1845023178103675No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7030.18014601308428937No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6650.17040839075540887No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT6250.16015826198816624No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT6210.15913324911144194No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6090.15605821048126917No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5860.15016438644010466No Hit
GGACGCGGTGCTAGAGGCACGGGATTTGGAAGTGGTAGTCTTGC5700.1460643349332076No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5640.1445268156181212No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5540.14196428342631054No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5450.13965800445368096No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5330.13658296582350815No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5220.13376418041251642No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5190.13299542075497323No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5110.13094539500152472No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4740.12146402589182526No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4700.120439013015101No Hit
ATCATACAGGTCGCGGAAGTCCAGGTTGTGTTCAGATGCAGTCA4630.11864524048083355No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4620.11838898726165246No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4600.11787648082329034No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4460.11428893575475543No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4310.11044513746703943No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT4290.10993263102867729No Hit
TTTTGCTTTGTCACGTGGGTCATACAGATCACGGAAGTCCAGGT4280.10967637780949624No Hit
GTAAGACAGCACCTGGCCCGGATAGATCAGGTTGGCGTTGGAGA4220.10813885849440984No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4200.10762635205604772No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)