FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390239
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63821.6354080448135628No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT33290.8530669666537686No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA22580.578619768910847No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG13470.34517308623689585No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9940.25471569986597953No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9670.2477968629480908No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9350.2395967599342967No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8020.20551508178321493No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7740.19833999164614505No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7530.19295867404334266No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7220.18501482424872964No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7020.1798897598651083No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6740.17271466972803845No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6290.16118327486489048No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG6270.16067076842652836No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT6210.15913324911144194No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6130.15708322335799343No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6060.15528945082372597No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5970.1529831718510964No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5870.15042063965928573No Hit
GGTACCACCGTCTACCACAAAGTTCGTAAAG5800.14862686712501827No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5520.14145177698794842No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5470.14017051089204308No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5440.13940175123449988No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5150.13197040787824899No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4970.12735784993298976No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4900.12556407739872233No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4830.12377030486445487No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4670.11967025335755781No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4570.11710772116574715No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4520.11582645506984181No Hit
GAGAAACCGTACGATCCGTTCGACCGCAGCC4470.1145451889739365No Hit
TACATCCTGAAAAAAGGTGAAGAACCGTACG4400.11275141643966903No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG4340.11121389712458263No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4310.11044513746703943No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG4220.10813885849440984No Hit
AAAATTTCCGGCAGCCAGGCATCCTCCCACA4190.10737009883686663No Hit
CCGTACGATCCGTTCGACCGTTCCCACCTGA4090.10480756664505597No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4070.10429506020669384No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4000.10250128767242637No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG3960.10147627479570212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)