FastQCFastQC Report
Sun 21 May 2023
EGAF00007931421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences365154
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9510.26043806174928935No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9050.24784063710105872No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8780.24044649654666247No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8230.22538435838029983No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7600.20813136375337526No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6930.18978294089616984No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5960.16321880631185748No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5050.13829781407296646No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4830.1322729588064214No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4820.13199910174885116No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4660.1276173888277275No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4630.1267958176550168No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4540.12433110413688471No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4170.11419839300678618No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4100.11228139360379456No Hit
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT3770.10324411070397695No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG3670.10050554012827466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)