FastQCFastQC Report
Sun 21 May 2023
EGAF00007931422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences365154
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62261.705034040432256No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19050.5216976946712893No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18770.5140296970593229No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8660.23716021185581976No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8660.23716021185581976No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7940.21744250371076315No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7460.20429736494739204No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5080.13911938524567716No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4790.13117753057614048No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4770.13062981646100003No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4710.12898667411557863No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4500.12323567590660378No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4470.1224141047338931No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4430.12131867650361217No Hit
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG4160.11392453594921595No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG3730.10214868247369602No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)