FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397902
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10260.2578524360269614No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10020.2518208000965062No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9260.23272061965006458No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8250.2073374851093988No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7610.19125312262818484No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7530.1892425773180331No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6560.1648647154324432No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5550.13948158089177737No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5230.1314393996511704No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5190.13043412699609452No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5170.12993149066855658No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5090.12792094535840481No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4790.1203814004453358No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4610.11585767349749437No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4370.10982603756703913No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4270.10731285592934943No Hit
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT4080.10253781081773904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)