FastQCFastQC Report
Wed 31 May 2023
EGAF00007931424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397902
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20350.5114324632698504No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20160.5066574181582401No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13730.3450598388547934No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9900.24880498213127855No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9510.2390035737442888No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9150.22995611984860595No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8330.20934803041955055No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5890.1480263984599223No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5690.14300003518454293No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5340.13420389945262903No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5310.13344994496132212No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5140.12917753617724967No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5140.12917753617724967No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4530.11384712818734262No Hit
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG4450.11183658287719087No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4360.10957471940327015No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG4000.10052726550758728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)