FastQCFastQC Report
Sun 21 May 2023
EGAF00007931426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433511
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54861.265481152727382No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22950.5293983312995518No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21160.48810756820472834No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG20270.4675775239843972No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19950.4601959350512444No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19540.4507382742306424No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG16520.3810745286740129No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15070.3476267038206643No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14190.3273273342544941No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13880.32017641997550234No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT12970.2991850264468491No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12730.2936488347469845No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12040.2777322836098738No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11040.2546648181937713No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10840.25005132511055084No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10560.2435924347940421No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA10310.2378255684400165No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10140.2339040993192791No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9960.22975195554438063No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8990.20737651409076124No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8440.1946894081119049No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8410.1939973841494218No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8040.1854624219454639No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8020.18500107263714186No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA7220.16654710030425987No Hit
ACCCGCCACATTGACGCAAAAGCAGTTTACG6730.15524404225036964No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6570.15155324778379325No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6410.14786245331721687No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6110.1409422136923861No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6070.140019515075742No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6020.1388661418049369No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5830.13448332337587743No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5640.13010050494681796No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5240.12087351878037697No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5050.11649070035131749No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4580.10564899160574934No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4560.10518764229742728No Hit
CAGACCCCAGAACAGTCTACCCCGTCTCGCA4530.10449561833494421No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4390.10126617317668986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)