FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403533
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69021.710392954231748No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51361.2727583617696694No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20210.5008264503770448No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19380.4802581201537421No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG18060.4475470407624655No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG17540.43466085797196263No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG14860.36824745435937084No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13390.33181920685544924No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13280.32909328357284284No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12640.3132333662922239No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT11570.2867175670886892No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11110.2753182515432443No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG10810.2678839153179542No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA10770.2668926704879155No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10570.26193644633772206No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10170.2520239980373352No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10100.2502893195847675No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9250.22922536694644555No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9150.22674725487134884No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8510.21088733759072986No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7700.19081462978244654No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7110.17619376853937596No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7010.17371565646427925No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6870.17024629955914386No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6860.1699984883516342No Hit
ACCCGCCACATTGACGCAAAAGCAGTTTACG6340.15711230556113132No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6310.1563688719386023No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6010.14893453571331217No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5950.14744766846825416No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5720.14174801069553172No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5440.13480929688526094No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5340.13233118481016423No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5110.1266315270374418No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4850.12018843564219035No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4620.11448877786946793No Hit
CAGACCCCAGAACAGTCTACCCCGTCTCGCA4500.11151504337935188No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4220.1045763295690811No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4070.10085916145643602No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4050.10036353904141668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)